Report for identifications
get_ID_Report.Rd
Generates a report for identifications
Value
This function returns a list. For each analysis a respective data frame including number of identifications per run is stored in the generated list.
Analysis - analysis name.
Run - run information.
Precursor.IDs - number of precursor identification.
Peptide.IDs - number of peptide identification.
Protein.IDs - number of protein identification.
ProteinGroup.IDs - number of proteingroup identification.
Details
For each submitted data a report with achieved number of identifications is generated on precursor-, peptide-, protein- and proteingroup-level.
Examples
# Load libraries
library(tibble)
library(stringr)
# Example data
data <- list(
DIANN = list(
filename = "B",
software = "DIA-NN",
data = list(
"DIA-NN" = tibble::tibble(
Run_mpwR = rep(c("A","B"), times = 10),
Precursor.IDs_mpwR = rep(c("A2", "A3", "B2", "B3", "C1"), each = 4),
Protein.IDs_mpwR = rep(c("A2", "A3", "B2", "B3", "C1"), each = 4),
Peptide.IDs_mpwR = rep(c("A", "A", "B", "B", "C"), each = 4),
ProteinGroup.IDs_mpwR = rep(c("A2", "A3", "B2", "B3", "C1"), each = 4)
)
)
)
)
# Result
output <- get_ID_Report(
input_list = data
)