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Upset Plot

plot_Upset.Rd

Plot intersections of analyses for different levels.

Usage

plot_Upset(
  input_list,
  label = c("Precursor.IDs", "Peptide.IDs", "Protein.IDs", "ProteinGroup.IDs"),
  nr_intersections = 10,
  highlight_overlap = FALSE
)

Arguments

input_list

A list with data frames and respective level information.

label

Character string. Choose between "Precursor.IDs", "Peptide.IDs", "Protein.IDs" or "ProteinGroup.IDs" for corresponding level. Default is "Precursor.IDs".

nr_intersections

Numeric. Maximum number of intersections shown in plot. Default is 10.

highlight_overlap

Logical. If TRUE, overlapping intersections is highlighted in yellow. Default is FALSE. If TRUE, overlapping intersections need to be in plot!

Value

This function returns a Upset plot.

Details

Identifications per level of each analysis are compared and possible intersections visualized.

Author

Oliver Kardell

Examples

# Load libraries
library(UpSetR)
library(tibble)

# Example data
data <- list(
 "A" = c("A", "B", "C", "D"),
 "B" = c("A", "B", "C", "F"),
 "C" = c("A", "B", "G", "E")
)

# Plot
plot_Upset(
  input_list = data,
  label = "Peptide.IDs"
)